Since the theme for some of our Moodle instances was "Moove" and this theme had some updates which would work on 4.5 only after upgrading the theme, first changed the theme to the built-in theme "Boost" from the UI, completed the upgrade, upgraded the plugins including the Moove theme, changed back to Moove theme, OK.
The upgrade itself was
screen
cd /var/www/theLMSgit
sudo -u www-data /usr/bin/php admin/cli/maintenance.php --enable
git config core.filemode false
#git branch --track MOODLE_405_STABLE origin/MOODLE_405_STABLE - this was done earlier.
git checkout MOODLE_405_STABLE
git pull
sudo chown -R azureuser:www-data .
sudo chmod -R 775 .
sudo -u www-data /usr/bin/php admin/cli/upgrade.php
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